Aidong Zhang PhD
Aidong Zhang
PhD
Professor and Chair of Computer Science And Engineering
Department of Biomedical Engineering
Jacobs School of Medicine & Biomedical Sciences
Specialty/Research Focus
Bioinformatics
Grants and Sponsored Research:
- January 2003–December 2008
Advanced Approaches for the Integration and Analysis of Genomic Data.
National Science Foundation
Role: Principal Investigator
Journal Articles:
- Li H, Li X, Ramanathan M, Zhang A. (2014) Identifying informative risk factors and predicting bone disease progression via deep belief networks. Methods (Oct), 69(3): 257-265.
- Li H, Zhang A, Bone L, Buyea C, Ramanathan M. (2014) A network modeling approach for the spatial distribution and structure of bone mineral content. AAPS J (May), 16(3): 478-487.
- Kim T, Bone L, Ramanathan M, Zhang A. (2013) BoneNET: a network model of bone microstructure and dynamics. Int J Data Min Bioinform (Jan), 8(2): 123-149.
- Chanda P, Zhang A, Ramanathan M. (2011) Modeling of environmental and genetic interactions with AMBROSIA, an information-theoretic model synthesis method. Heredity (Edinb) (Oct), 107(4): 320-327.
- Kim T, Hwang W, Zhang A, Sen S, Ramanathan M. (2010) Multi-agent modeling of the South Korean avian influenza epidemic. BMC Infect Dis (Aug), 10: 236-236.
- Chanda P, Zhang A, Sucheston L, Ramanathan M. (2009) A two-stage search strategy for detecting multiple loci associated with rheumatoid arthritis. BMC Proc (Dec), 3 Sup: 72-72.
- Chanda P, Sucheston L, Liu S, Zhang A, Ramanathan M. (2009) Information-theoretic gene-gene and gene-environment interaction analysis of quantitative traits. BMC Genomics (Nov), 10: 509-509.
- Hwang WC, Zhang A, Ramanathan M. (2008) Identification of information flow-modulating drug targets: a novel bridging paradigm for drug discovery. Clin Pharmacol Ther (Nov), 84(5): 563-572.
- Hwang W, Cho YR, Zhang A, Ramanathan M. (2008) CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions. BMC Bioinformatics (Jan), 9: 64-64.
- Cho YR, Hwang W, Ramanathan M, Zhang A. (2007) Semantic integration to identify overlapping functional modules in protein interaction networks. BMC Bioinformatics (Jul), 8: 265-265.
- Hwang W, Cho YR, Zhang A, Ramanathan M. (2006) A novel functional module detection algorithm for protein-protein interaction networks. Algorithms Mol Biol (Dec), 1: 24-24.
- Bhasi K, Zhang L, Brazeau D, Zhang A, Ramanathan M. (2006) VizStruct for visualization of genome-wide SNP analyses. Bioinformatics (Jul), 22(13): 1569-1576.
- Wang L, Zhang A, Ramanathan M. (2005) BioStar models of clinical and genomic data for biomedical data warehouse design. Int J Bioinform Res Appl (Jan), 1(1): 63-80.
- Bhasi K, Zhang L, Zhang A, Ramanathan M. (2004) Analysis of pharmacokinetics, pharmacodynamics, and pharmacogenomics data sets using VizStruct, a novel multidimensional visualization technique. Pharm Res (May), 21(5): 777-780.
- Tang C, Zhang A, Ramanathan M. (2004) ESPD: a pattern detection model underlying gene expression profiles. Bioinformatics (Apr), 20(6): 829-838.
- Zhang L, Zhang A, Ramanathan M. (2004) VizStruct: exploratory visualization for gene expression profiling. Bioinformatics (Jan), 20(1): 85-92.
- Zhang L, Zhang A, Ramanathan M. (2003) Fourier harmonic approach for visualizing temporal patterns of gene expression data. Proc IEEE Comput Soc Bioinform Conf (Jan), 2: 137-147.