Feng Qin PhD

Feng Qin

Feng Qin
PhD

Director of Biophysics Graduate Program

Department of Physiology and Biophysics

Jacobs School of Medicine & Biomedical Sciences


Specialty/Research Focus

Computational Biology; Electrophysiology; Ion channel kinetics and structure; Membrane Biophysics; Membrane Proteins; Membrane Transport (Ion Transport); Pain; Pain Management; Protein Folding; Protein Function and Structure; Structural Biology

Contact Information
330 Cary Hall
Buffalo, New York 14214
Phone: 716-829-6030
Fax: 716-829-2569
qin@buffalo.edu



Professional Summary:

Never before have we known so much about proteins. Their sequences can be determined in hours, and their structures predicted computationally or visualized experimentally at near-atomic resolution. Yet one of biology's most fundamental questions remains: How do proteins perform their biological functions?

The consequences extend far beyond basic biology. In the field of pain, numerous molecular targets have been identified, including thermoTRP ion channels that detect heat and other painful stimuli. When TRPV1 was cloned nearly three decades ago, it was widely anticipated that understanding its molecular mechanisms would rapidly lead to a new generation of highly specific, non-opioid analgesics. Today we possess detailed structural information for TRPV1 and many other pain receptors, yet effective non-opioid pain therapies remain scarce.

This experience with pain receptors exemplifies a broader challenge facing modern biology. Knowing what a protein looks like does not necessarily reveal how it performs its biological function. Bridging molecular structure and biological function has therefore emerged as one of the central challenges in modern biology.

Our Vision: Observe Biology in Motion

We believe that bridging structure and function requires observing biology in motion. Our goal is not simply to determine what proteins look like, but to understand how they work. Protein function emerges through transient structural states that are often invisible to conventional experimental approaches. Our laboratory integrates structural biology, biophysics, thermodynamics, and computation to reveal these dynamic processes and uncover the physical principles governing protein function.

Guided by this vision, our research has continually evolved as each discovery exposed the limitations of existing approaches. We began by combining patch-clamp electrophysiology with mutagenesis to define structure-function relationships. When functional measurements alone proved insufficient tot explain the mechanisms of temperature sensing, we introduced differential scanning calorimetry to directly measure heat absorption during channel activation. More recently, we expanded into cryo-EM and are now developing millisecond time-resolved cryo-EM to capture protein motions in real time.

Together, these advances have uncovered fundamental mechanisms governing thermoTRP channel function, including lipid regulation of temperature receptors, molecular mechanisms of desensitization, and the structural basis of thermal sensing. More recently, integrating electrophysiology, thermodynamics, and structural biology led us to propose a new thermodynamic framework in which temperature activation arises through progressive conformational destabilization rather than conventional allosteric transitions. This framework offers a new way of thinking about temperature sensing and may represent a broader conceptual mechanism by which biological receptors harness structural destabilization to perform biological work.

Over three decades of research, we have learned that major biological discoveries are often driven by new ways of observing nature. Guided by this philosophy, our laboratory has developed innovations ranging from the QuB software suite for single-channel kinetic analysis, to submillisecond temperature-clamp electrophysiology, differential scanning calorimetry, and now millisecond time-resolved cryo-EM. We believe that revealing the transient molecular states connecting structure and function is essential for understanding how proteins perform their biological functions. When existing methods cannot answer important biological questions, we build new ones.

Education and Training:

  • PhD, Biophysics, State University of New York at Buffalo (1996)
  • BS, Electrical Engineering, University of Science and Technology of China (1988)
  • BS, Mathematics, University of Science and Technology of China (1988)

Employment:

  • Professor, Physiology and Biophysics, State University of New York at Buffalo (2023-present)
  • Director of Biophysics Graduate Program, Physiology and Biophysics, University at Buffalo (2021-present)
  • Associate Professor, Dept of Physiology and Biophysics, State University of New York at Buffalo (2005–2023)
  • Assistant Professor, Dept of Physiology and Biophysics, State University of New York at Buffalo (1999–2005)
  • Research Assistant Professor, Dept of Physiology and Biophysics, State University of New York at Buffalo (1997–1999)
  • Post Doctoral Fellow, Department of Biophysical Sciences, State University of New York at Buffalo (1996–1997)
  • Research Assistant, Department of Biophysical Sciences, State University of New York at Buffalo (1992–1996)
  • Research Assistant, MRC Laboratory of Molecular Biology (1992)

Awards and Honors:

  • NIH/NIGMS Maximizing Investigators' Research Award (MIRA, R35) (2026)

Research Expertise:

  • Computational & quantitative biophysics: Molecular kinetics; hidden Markov modeling; maximum-likelihood analysis; signal processing; structural and quantitative modeling
  • Electrophysiology: Patch-clamp recording in cells and reconstituted systems; single-channel recording and kinetic analysis; ultrafast temperature-clamp electrophysiology
  • Fluorescence microscopy & spectroscopy: TIRF microscopy, simultaneous fluorescence imaging and patch-clamp recording, time-resolved fluorescence spectroscopy, LRET, and single-molecule imaging
  • Instrumentation & method development: Ultrafast laser temperature perturbation; time-resolved cryo-EM instrumentation; development of experimental and computational methods for studying protein dynamics
  • Protein biochemistry: Membrane protein expression, purification, reconstitution, and biochemical characterization
  • Protein thermodynamics: Differential scanning calorimetry (DSC); thermal activation and conformational energetics; quantitative thermodynamic analysis
  • Structural biology & cryo-EM: Single-particle cryo-EM; time-resolved cryo-EM; structural analysis of transient protein states

Research Centers:

  • Keck Center for Computational Biophysics

UB 2020 Strategic Strengths:

  • Information and Computing Technology
  • Integrated Nanostructured Systems
  • Molecular Recognition in Biological Systems and Bioinformatics

Grants and Sponsored Research:

  • August 2026–August 2030
    Mechanisms of Heat Sensing by Nociceptive Vanilloid Receptors (Award 106744)
    NIH
    Role: Principal Investigator
    $2,178,335
  • April 2020–February 2025
    Mechanisms of Heat Sensing by Nociceptive Vanilloid Receptors (Award 87337)
    NIH
    Role: Principal Investigator
    $2,684,432
  • March 2016–February 2019
    Temperature-Dependent Gating of Vanilloid Receptors (Award 74283)
    NIH
    Role: Principal Investigator
    $449,977
  • April 2013–February 2016
    Temperature-Dependent Gating of Vanilloid Receptors (Award 64563)
    NIH
    Role: Principal Investigator
    $1,021,754
  • June 2009–January 2014
    Algorithms for Molecular Kinetics (Award 50134)
    NIH
    Role: Principal Investigator
    $1,897,379
  • August 2007–May 2013
    Mechanisms of Heat Activation & Polymodal Gating of VR1 Receptor Channels (Award 43926)
    NIH
    Role: Principal Investigator
    $1,244,668
  • June 2010–May 2011
    ARRA: Mechanisms of Heat Activation and Multimodal Functions of VR1 Receptor Channels (Award 54780)
    NIH
    Role: Principal Investigator
    $75,000
  • April 2008–August 2010
    Laser Device for Ion Channel Activation (Award 46757)
    NIH
    Role: Co-Investigator
    $9,978
  • April 2005–March 2009
    Algorithms for Molecular Kinetics (Award 35937)
    NIH
    Role: Principal Investigator
    $1,529,531
  • June 2002–July 2007
    Structures & Mechanisms of Heat Activation & Polymodal Gating of VR1 Receptors (Award 25110)
    NIH
    Role: Principal Investigator
    $1,082,040
  • April 2000–March 2005
    Algorithms for molecular kinetics (Award 010284)
    NIH
    Role: Principal Investigator
    $1,975,782
  • April 1996–March 2000
    Algorithms for Molecular Kinetics (Award 001528)
    NIH
    Role: Principal Investigator
    $980,717
See all (2 more)

Patents:

  • High Time-Resolution Device for Cryo-EM Sample Preparation 030-7481 (2024)

Journal Articles:

See all (32 more)

Books and Book Chapters:

  • Islas LD, Qin F. (2014) Thermal sensors (Curr Top Membr.). Academic Press.
  • Qin F. (2014) Temperature sensing by thermal TRP channels: thermodynamic basis and molecular insights. In: Thermal Sensors ( Islas L, Qin F, editors). , p.19-50.
  • Qin F. (2014) Principles of single-channel kinetic analysis. In: Methods Mol Biol. doi: 10.1007/978-1-4939-1096-0_23. PubMed PMID: 25023321, 1183:371-99.
  • Qin F. (2011) In: Time-Resolved Activation of Thermal TRP Channels by Fast Temperature Jumps. PubMed PMID: 22593957
  • Qin F. (2007) Regulation of TRP ion channels by phosphatidylinositol-4,5-bisphosphate. In: Handb Exp Pharmacol. doi: 10.1007/978-3-540-34891-7_30. PubMed PMID: 17217076, (179):509-25.

Abstracts:

  • Andra K, Saxena A, Liu B, Qin F. (2015) Probing temperature sensing by thermal TRP channels with calorimetry. Biophysical Society Meeting, (Feb)
  • Chin F, Saxena A, Cheng P, Qin F. (2015) Detection of Interactions of Inositol phospholipids with Ion Channels. Biophysical Society Meeting, (Feb)
  • Liu B, Qin F. (2015) A single-residue switch for high temperature dependence of thermal TRPV3 channels. Biophysical Society Meeting, (Feb)

Presentations:

  • "Temperature Sensing by Ion Channels: The Suicidal Mechanism" International Ion Channel Conference (IICC 2025) (2025)
  • "Too hot to hold: The physical trap for temperature receptors" Seminar, Flatiron Institute (2025)
  • "Biophysical clues on temperature sensing by ion channels" Seminar, St. John's University, Department of Biological Sciences (2024)
  • "Temperature receptors are suicidal receptors" Seminar for Spanish Ion Channel Network (2024)

Service Activities:

  • NIH Special Emphasis Panel, MBBC-G, Macromolecular Biophysics and Biological Chemistry Review Branch; Panel reviewer (2026)
  • NIH Biochemistry and Biophysics of Membranes (BBM) Study Section; Ad hoc member (2025)
  • NIH Special Emphasis Panel/Scientific Review Group ZRG1 MBBC-G; Mail reviewer (2024)
  • NIH Special Emphasis Panel ZRG1 ICN-S: Pain, Olfactory, and Motor Neuroscience; Panel reviewer (2023)
  • University at Buffalo Institutional Animal Care and Use Committee (IACUC); Member (2022–present)
  • Director of the Biophysics Graduate Program (2021–present)
  • IGPBS/PPBS Graduate Admissions Committees; Member (2019–2024)
  • Frontiers in Cellular Neuroscience; Associate Editor
  • Faculty Council; Departmental Representative

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Contact Information

330 Cary Hall
Buffalo, New York 14214
Phone: 716-829-6030
Fax: 716-829-2569
qin@buffalo.edu