Gene Expression; Infectious Disease; Microbial Pathogenesis; Microbiology; Molecular and Cellular Biology; Molecular Basis of Disease; Protein Function and Structure; Regulation of metabolism; RNA; Transcription and Translation
Developmental Regulation of Gene Expression in Trypanosomes
Our laboratory uses molecular biological and biochemical approaches to study a group of parasitic protozoans that cause disease in humans and domestic animals in much of the tropical world. Two projects focus on Trypanosoma brucei, the causative agent of African sleeping sickness, which is transmitted by the tse-tse fly. Other projects focus on Trypanosoma cruzi, which causes Chagas disease in South and Central America and is transmitted by the reduviid bug. Treatment for these diseases is severely limited due to increasing drug resistance and issues of drug toxicity or lack of available drugs. The goal of our work is to discover and exploit regulatory events that occur in the parasite life cycle that may be used to prevent growth or transmission of the parasite.
The first project, examines a pair of unique RNA binding proteins, P34 and P37, which are highly homologous to one another. We have shown that these proteins interact with 5 S rRNA and ribosomal protein L5 in a unique pre-ribosomal complex that is essential for ribosomal biogenesis and survival of the trypanosomes. The role of these trypanosome-specific proteins in the normally highly conserved pathway of ribosomal biogenesis is a surprising finding and may suggest that these proteins and the pre-ribosomal complex could be developed as targets for chemotherapy. In addition, we have studied these proteins as models for mechanisms of developmental regulation in trypanosomes. We have developed a fluorescence resonance energy transfer assay that allows us to study the interactions within the pre-ribosomal complex and also allows us to develop a high throughput screen for small molecules that disrupt the complex in trypanosomes and do not harm the human host. We have also begun work characterizing this complex in the related parasite, T. cruzi.
The second project centers on the mitochondrial ATP synthase of T. brucei. This protein complex couples the energy generated by the electron transport chain to the synthesis of ATP. In T. brucei we have shown that the ATP synthase is regulated through the life cycle of the organism by several unique mechanisms which appear to be different from the regulatory mechanisms for other mitochondrial proteins such as those in the electron transport chain. This regulation may be critical to understanding how this parasite responds to change in the environment due to the two host organisms (in this case, the tsetse fly and the cow). We have shown that the ATP synthase is responsible for maintaining a mitochondrial membrane potential in the bloodstream stage of the parasite. This membrane potential is required for the parasite’s survival since without it the parasite cannot pre-adapt for survival in the insect vector. Recently we have shown that the F0 membrane component is comprised of three different c subunits, suggesting that this may provide an adaptive response under different environmental confditins. These results suggest that the ATP synthase may provide an excellent target for drug development focused on preventing transmission of the parasite by the insect.
In the third project in long standing collaboration with Dr. Beatriz Garat at the Universidad de la Républica in Uruguay, we are examining both DNA and RNA binding proteins which regulate gene expression in Trypanosoma cruzi.
Education and Training:
PhD, Biochem/Mol. Biol., New York University (1981)
BS, University of Maine (1977)
Employment:
Professor, UB (2002-present)
Associate Professor, UB (1998–2002)
Assistant Professor, UB (1992–1997)
Assistant Professor, USUHS (1987–1992)
Awards and Honors:
Ellison Foundation Visiting Scholar (2003)
National Research Council Award (1987)
National Research Service Award (1984)
Summer Fellowship, New York University (1981)
Summer Fellowship, New York University (1980)
Research Centers:
Witebsky Center for Microbial Pathogenesis and Immunology
UB 2020 Strategic Strengths:
Molecular Recognition in Biological Systems and Bioinformatics
Grants and Sponsored Research:
April 2010–March 2014 A novel preribosomal complex in trypanosomes NIH Role: Principal Investigator
July 2010–June 2013 Ribosomal biogenesis at a chemotherapeutic target for T. cruzi American Heart Association Role: Principal Investigator
April 2004–March 2011 Trypanosome RNA binding proteins NIH Role: Co-Investigator
March 2002–February 2007 Biogenesis of the T. brucei Mitochondrial ATP Synthase NIH Role: Principal Investigator $1,537,920
September 2001–August 2006 Training-Infectious Disease, Microbiology, and Immunology for Medical Students State University of New York at Buffalo Role: Consultant $213,900
July 2001–June 2004 Single-stranded Binding Proteins in Trypanosoma cruzi NIH/Fogarty FIRCA Role: Principal Investigator $118,108
July 1999–June 2004 Training in Microbial Pathogenesis National Institute of Allergy and Infectious Diseases Role: Co-Investigator $856,496
April 1999–March 2004 Developmental Regulation of DNA/RNA Binding Proteins NIH Role: Principal Investigator $885,006
July 2001–June 2002 UB Graduate Group Award Buffalo DNA Replication Graduate Group Role: Co-Principal Investigator $3,000
June 1996–May 2002 Training Program in Peridontal Disease National Institute for Dental & Craniofacial Research Role: Consultant $1,165,033
December 1992–November 1999 Control and Development of Parasite Energy Metabolism NIH Role: Principal Investigator $740,665
January 1994–January 1999 Markey Foundation Award Markey Foundation Award Role: Contributor $1,000,000
May 1995–April 1996 Characterization of a Novel DNA Polymerase from Trypanosoma brucei UB Multidisciplinary Pilot Project Program Role: Principal Investigator $20,000
August 1992–August 1995 Energy Matabolism of Trypanosoma brucei Research Competition Award, UB Intramural Role: Principal Investigator $50,000
September 1989–January 1993 Structure, Function, and Developmental Regulation of T. brucei National Science Foundation Role: Principal Investigator $215,000
April 1988–September 1991 H+-ATPase from T. brucei: Isolation and Characterization USUHS Role: Principal Investigator $103,750
October 1987–March 1988 H+-ATPase: Structure and Function of the Active Site USUHS Role: Principal Investigator $13,500
Duhagon, M.A., Dallagiovanna, B., Ciganda, M., Ruyechan, W., Williams, N., and Garat, B. A novel type of single-stranded nucleic acid binding protein recognizing a highly frequent motif in the intergenic regions of Trypanosoma cruzi. Biochem. Biophys. Res. Commun. 2003; 309.
Pitula, J., Park, J., Parsons, M., Ruyechan W, Williams N. Two families of RNA binding proteins from Trypanosoma brucei associate in a direct protein-protein interaction. Mol. Biochem. Parasit.. 2002; 122.
Pitula J, Ruyechan WT, Williams N. Two Novel RNA Binding Proteins from Trypanosoma brucei Are Associated with 5S rRNA.. Biochem Biophys Res Commun. 2002; 290(1).
Brown B SV, Chi TB, Noreen Williams. The Trypanosoma brucei mitochondrial ATP synthase is developmentally regulated at the level of transcript stability.. Mol Biochem Parasitol. 2001; 115(2).
Brown B SV, Stanislawski A, Perry QL, Noreen Williams. Cloning and characterization of the subunits comprising the catalytic core of the Trypanosoma brucei mitochondrial ATP synthase.. Mol Biochem Parasitol. 2001; 113(2).
Brown SV, Noreen Williams. Analysis of the 60 S ribosomal protein L27a (L29) gene of Trypanosoma brucei.. Int J Parasitol. 1999; 29(5).
Fuenmayor, J., Zhang, J., William Ruyechan, Noreen Williams. Identification and characterization of two DNA polymerase activities present in Trypanosoma brucei mitochondria. J. Euk. Microbiol.. 1998; 45.
Zhang, J., William Ruyechan, Noreen Williams. Developmental regulation of two nuclear RNA binding proteins, p34 and p37, from Trypanosoma brucei. Mol. Biochem. Parasitol.. 1998; 92.
Chi, T.B., Brown, S.V., Noreen Williams. Subunit 9 of the Mitochondrial ATP synthase of Trypanosoma brucei is nuclearly encoded and developmentally regulated. Mol. Biochem. Parasitol.. 1998; 92.
Pitula, J., William Ruyechan, Noreen Williams. T. brucei: identification and purification of a poly A binding protein. Exp. Parasitol.. 1998; 88.
Zhang J, Williams N. Purification, cloning, and expression of two closely related Trypanosoma brucei nucleic acid binding proteins.. Mol Biochem Parasitol. 1997; 87(2).
Chi TB, Choi SY, Williams N. The ATP synthase of Trypanosoma brucei is developmentally regulated by an inhibitor peptide.. Arch Biochem Biophys. 1996; 333(1).
Williams N. The mitochondrial ATP synthase of Trypanosoma brucei: structure and regulation.. J Bioenerg Biomembr. 1994; 26(2).
Noreen Williams. The mitochondrial ATP synthase of Trypanosoma brucei: Structure and regulation. J. Bioenerg. Biomemb.. 1994; 26.
Noreen Williams, Frank, P.. The mitochondrial ATP synthase of T. brucei: Isolation and characterization of an intact F1 Moiety. Molec. Biochem. Parasitol.. 1990; 43.
Pedersen, P.L., Noreen Williams, Hullihen, J.. Mitochondrial ATP synthase: Dramatic magnesium induced alterations in the structure and function of the F1-ATPase moiety. Biochem.. 1987; 26.
Noreen Williams, Hullihen, J., Pedersen, P.L.. Ligand binding studies of the F1 moiety of rat liver ATP synthase - implications about its structure, active sites and mechanism of action. Biochem.. 1987; 26.
Noreen Williams, Fox, D.K., Shea, C., Roseman, S.. Pel, the protein that permits lambda DNA penetration of Escherichia coli, is encoded by a gene in ptsM and is required for mannose utilization by the phosphotransferase system. Proc. Nat. Acad. Sci.. 1986; 83.
Noreen Williams, Amzel, L. M., Pedersen, P.L.. Proton ATPase of rat liver mitochondria: A rapid procedure for purification of a stable, reconstitutively active F1 preparation using a modified chloroform method. Anal. Biochem.. 1984; 140.
Noreen Williams, Hullihen, J., Pedersen, P.L.. The proton adenosine triphosphatase complex of liver mitochondria. Temperature dependent dissociation-reassociation of the F1-ATPase subunits. Biochem.. 1984; 223.
Noreen Williams, Coleman, P.S.. Exploring the adenine nucleotide binding sites on mitochondrial F1-ATPase with a new photoaffinity probe 3'-O-(4-benzoyl)benzoyl adenosine 5'-triphosphate. J. Biol. Chem.. 1982; 257.
Li, J., William Ruyechan, Noreen Williams. Differential regulation of two homologous nucleic acid binding proteins in T. brucei, p34 and p37. 2nd Internatioinal Conference on proteins that Bind RNA, Austin/Lake Travis, Texas. 2001.
Li, J., William Ruyechan, Noreen Williams. Differential regulation of two homologous RNA binding proteins in T. brucei, p34 and p37. RNA Society Meeting, Banff, Alberta. 2001.
Hellman, K., William Ruyechan, Noreen Williams. Characterization of the RNA binding properties and protein-protein interactions of p34 and p37 from Trypanosoma brucei. RNA Society Meeting, Banff, Alberta. 2001.
Pitula, J., William Ruyechan, Noreen Williams. Two families of RNA binding proteins from Trypanosoma brucei associate in a complex which contains 5S rRNA. RNA Society Meeting, Madison Wisconsin. 2000.
Li, J., William Ruyechan, Noreen Williams. Differential regulation of two homologous RNA binding proteins in Trypanosoma brucei, p34 and p37. RNA Society Meeting, Madison, Wisconsin. 2000.
Pitula, J., William Ruyechan, Noreen Williams. Two novel RNA binding proteins from Trypanosoma brucei. RNA Society Meeting, Edinburgh, Scotland. 1999.
Brown, S.V., Noreen Williams. Regulation of the Trypanosoma brucei ATP synthase beta subunit. FASEB J.. 1997; 11.
Zhang, J., William Ruyechan, Noreen Williams. Characterization of Trypanosoma brucei Single-Strand Nucleic Acid Binding Proteins p34 and p37. Global Meeting on Parasitic Disease, New Delhi, India. 1996.
Brown, S.V., Chi, T.B., Tanaka, M., Noreen Williams. The Mitochondrial ATP Synthase of Trypanosoma brucei: Regulation and Genetic Mapping. Biophys. J.. 1995; 68.
Sondej, M., Noreen Williams. Regulation of the Mannose Phosphotransferase System in Escherichia coli. 95th ASM General Meeting. 1995.
Noreen Williams. Regulation and Characterization of the Trypanosoma brucei ATP Synthase. International Congress of Protozoology Reports, Berlin, Germany. 1993.
William Ruyechan, Noreen Williams. DNA binding Proteins of Trypanosoma brucei. International Congress of Protozoology, Berlin, Ge rmany. 1993.
Sondej, M., Noreen Williams. The Escherichia coli Pel Protein: Its Role in lambda Phage Penetration and Mannose Transport. 93rd ASM General Meeting. 1993.
Noreen Williams, Frank, P.H.. Developmental Regulation and Characterization of the Trypanosoma brucei ATP Synthase. Biophys. J.. 1992; 61.
Noreen Williams, Frank, P.H.. The mitochondrial ATP synthase of Trypanosoma brucei. Biophys. J.. 1990; 57.
Noreen Williams, Frank, P.H.. The mitochondrial ATP synthase from Trypanosoma brucei. 6th EBEC Meetings Short Reports, Noordwijkerhout, The Netherlands. 1990.
Noreen Williams, Fox, D.K., Roseman, S.. The E. coli mannose phosphotransferase system (PTS): Molecular cloning and identification pf products of the ptsM locus. Fed. Proc.. 1986; 45.
Pedersen, P.L., Noreen Williams, Hullihen, J.. Relationship of ligand binding properties of ATP synthase (F1) of rat liver to the enzyme structure and mechanism. 4th EBEC Meeting Short Reports, Prague, Czechoslovakia. 1986.
Noreen Williams, Pedersen, P.L.. Magnesium binding to the purified F1-ATPase of rat liver mitochondria -Implications for function. Biophysical J.. 1985; 47.
Kaplan, R.S., Noreen Williams, Hullihen, J., McEnery, M., Nakashima, R.A., Paggi, M., Pedersen, P.L.. Anion transport, ATP synthesis, and ATP export in liver mitochondria-Recent progress on molecular components catalyzing these processes. Short Reports of the Third EBEC Meeting, Hanover, Germany. 1984; A.
Noreen Williams, Pedersen, P.L.. Structure of the H+-ATPase of liver mitochondria: Interaction of the gamma subunit with both the alpha and beta subunits. Biophysical J.. 1983; 41.
Coleman, P.S., Noreen Williams. Probing the mechanism of the rat liver F1-ATPase by benzoyl ATP. Biophysical J.. 1982; 37.
Noreen Williams, Coleman, P.S.. Photoaffinity labelling of specific subunits of mitochondrial F1-ATPase by benzoylbenzoic ATP. Fed. Proc.. 1981; 40.
Noreen Williams, Coleman, P.S.. Benzophenone derivatives of adenine nucleotides as new photoaffinity probes for the F1-ATPase binding site studies. Fed. Proc.. 1980; 39.
Noreen Williams, Hullihen, J., Pedersen, P.L.. Mitochondrial ATP synthase: Role of metal binding in structure and function. Ion Pumps: Structure, Function and Regulation. 1988.
Professional Memberships:
NIH Tropical Medicine and Parasitology Study Section; member, ad hoc 2000 (2000)
The RNA Society; member (1999)
NIH International and Cooperative Projects Study Section; Chair 2000-2001, Member 1996-2001, ad hoc Member 2001-2002 Chair Special Study Section 2002 (1996–2002)
American Society for Tropical Health and Hygiene; member (1993)
Editorial Board, Journal of Bioenergetics and Biomembranes; member (1991)
American Association for the Advancement of Science; Member (1990)
American Society for Microbiology; member; president of Western New York branch ASM, 1995-1997 (1986)
American Society for Biochemistry and Molecular Biology; member (1986)
Biophysical Society (The Bioenergetics Subgroup_; member (1980–1998)
New York Academy of Science; member (1978)
Presentations:
"Trypanosoma brucei ribosomal biogenesis pathway: conseved and not conserved"" Columbia University, Columbia University (2012)
"Molecular interactions in a preribosomal particle in T. brucei" Woods Hole Meeting on Molecular Parasitology (2011)
"“A novel preribosomal particle in Trypanosoma brucei "" Woods Hole Meeting on Molecular Parasitology (2009)
"“Trypanosoma brucei RNA binding proteins, p34 and p37, are essential components of the ribosomal biogenesis pathway"" Woods Hole Meeting on Molecular Parasitology (2008)
"Novel Approaches" Woods Hole Meeting on Molecular Parasitology (2007)
"“Multitasking RNA Binding Proteins in Trypanosoma brucei: How Do They Do It All ?”" Drexel University School of Medicine (2006)
"“T. brucei RNA binding proteins, p34 and p37, regulate the cellular localization of NOPP44/46"" Woods Hole Meeting on Molecular Parasitology (2006)
"“Developmental regulation of the Trypanosoma brucei ATP synthase is mediated by subunit transcript levels”" Woods Hole Meeting on Molecular Parsitology (2005)
"“Intertwined studies of function and developmental regulation of two trypanosome RNA binding proteins”" University of South Alabama (2005)
"Biochemistry" Woods Hole Meeting on Molecular Parasitology (2005)
"Function and developmental regulation of two RNA binding proteins" Universidad de la Républica, Universidad de la Républica, Dept. of Biochemistry, Montevideo, Uruguay (2004)
"Function and developmental regulation of two RNA binding proteins" Instituto de Biologia Molecular do Parana, Instituto de Biologia Molecular do Parana, Instituto de Biologia Molecular do Parana (2004)
"Post- transcriptional regulation of two closely related RNA binding proteins by their 3’ untranslated regions in Trypanosoma brucei" Woods Hole Meeting on Moecular Parasitology (2004)
"RNA Editing and Splicing" Woods Hole Meeting on Molecular Parasitology, RNA Editing and Splicing (2004)
"Intertwined studies of function and developmental regulation of two trypanosome RNA binding proteins" Dept of Biochemistry and Molecular Pharmacology, West Virginia University (2003)
"Intertwined studies of function and developmental regulation of two trypanosome RNA binding proteins" Ellison Visiting Scholar Seminar Series, Marine Biological Laboratory, Global Infectious Diseases Laboratory (2003)
"A study of two novel RNA binding proteins in trypanosome ribosomal biogenesis" Woods Hole Meeting on Molecular Parasitology (2003)
"The 3'UTR regulates developmental expression of p34 and p37 in Trypanosoma brucei" Woods Hole Meeting on Molecular Parasitology (2003)
"Analysis of the role of two RNA binding proteins in ribosome biogenesis in trypansomes" Ribosome 2003, RNA Society (2003)
"Post-transcriptional Regulation of p34 and p37 in Trypanosoma brucei" Tetra-state Trypanosome Meeting, Rockefeller University, Rockefeller University (2003)
"Protein-protein and protein -RNA interactions of T. brucei p34 and p37" Tetra-state Trypanosome Meeting, Rockefeller University, Rockefeller University (2003)
"Translational and posttranslational regulation of T. brucei RNA binding proteins p34 and p37" Tetra-State Trypanosome Meeting, Rockefeller University, Rocekfeller University (2003)
"Intertwined studies of function and developmental regulation of two trypanosome RNA binding proteins" New York State Department of Health, Wadsworth Center, Axelrod Institute for Public Health (2003)
"RNAi and RNA Stability" Woods Hole Meeting on Molecular Parasitology, RNAi and RNA Stability (2003)
"Intertwined studies of function and developmental regulation of two trypanosome RNA binding proteins" University of Vermont, University of Vermont, Dept of Microbiology and Molecular Genetics (2002)
"Functional Analysis of two RNA binding proteins, p34 and p37, from T. brucei" Woods Hole Meeting on Molecular Parasitology (2002)
"Function and Regulation of Two 5S rRNA Binding Proteins from Trypanosoma brucei, p34 and p37" Universidad de la Républica, Montevideo, Uruguay, Universidad de la Républica, Dept. of Biochemistry (2002)
"Differential regulation of two homologous RNA binding proteins in T. brucei, p34 and p37" Woods Hole Meeting on Molecular Parasitology (2001)
"Genetic regulation of the Trypanosoma brucei mitochondrial ATP synthase" Woods Hole Molecular Parasitology (2000)
"Two families of developmentally regulated RNA binding proteins from Trypanosoma brucei associate in a complex which contains 5S rRNA" Woods Hole Meeting on Molecular Parasitology (2000)
"Tropical parasites: Microbes on the move" Buffalo Museum of Science (2000)
"Two Trypanosoma brucei RNA binding proteins in search of a target" UMDNJ (2000)
"Two novel RNA binding proteins from Trypanosoma brucei" Woods Hole Meeting on Molecular Parasitology (1999)
"Developmental regulation of two RNA binding proteins in Trypanosoma brucei" Rockefeller University (1998)
"Life cycle regulation of two RNA binding proteins in Trypanosoma brucei" University at Buffalo, Dept. of Biology (1997)
"Mitochondrial DNA polymerases in T. brucei" Buffalo DNA Replication Graduate Group (1997)
"Characterization of Trypanosoma brucei single-strand nucleic acid binding proteins p34 and p37" Global Meeting on Parasitology (1996)
"Pathways, targets, and resistance, I." Woods Hole Meeting on Molecular Parasitology (1995)
"The mitochondrial ATP synthase of Trypanosoma brucei: Regulation and genetic mapping" Biophysical Society (1995)
"ATP synthesis: How a parasite regulates a complex enzyme" University at Buffalo, Dept. of Microbiology (1994)
"ATP synthesis: How a parasite regulates a complex enzyme" University at Buffalo, Dept. of Biophysics (1994)
"Making ATP: How a parasite regulates a complex enzyme" University at Buffalo, Center for Advanced Molecular Biology and Immunology (1994)
"Regulation and characterization of the Trypanosoma brucei ATP synthase" International Congress on Protozoology (1993)
"Characterization and developmental regulation of the mitochondrial ATP synthase of Trypanosoma brucei" University of Buffalo, Dept. of Biochemistry (1991)
"Developmental regulation of the Trypanosoma brucei ATP synthase" University of Pennsylvania Medical Center Hershey, Cell Biology (1990)
"Regulation of the mitochondrial ATP synthase of Trypanosoma brucei" USUHS, Dept. of Microbiology (1990)
"The mitochondrial ATP synthase of Trypanosoma brucei" Biophysical Society (1990)
"The mitochondrial ATP synthase of Trypanosoma brucei" University of New Mexico, Dept. of Biochemistry (1990)
"The mitochondrial ATP synthase of Trypanosoma brucei" NIH Parasitology Section (1989)
Director of Graduate Studies; Director (2006–2008)
Associate Director of Graduate Studies; Chair-Elect (2004–2006)
Review Panel for Interdisciplinary Research and Creative Activity Fund; University at Buffalo; Member (2002)
Annual Buffalo RNA Graduate Group Spring Forum; Organizing Committee Member (2001–2002)
Mock Study Section Review Panel; sponsored by the Office of the Vice President for Research,University at Buffalo; Panel Member (2001)
NIH Biomedical Summer Undergraduate Research Experience; Member (2001)
Witebsky Center for Microbial Pathogenesis and Immunology; Ex-officio member of all Witebsky Center Committees; Member Microbial Pathogenesis Training Grant Committee 1998-present; Member organizing committee Fall Immunology Meeting; Director (2000–2002)
Provost's Associate Professor Advisory Board; University at Buffalo; Member (2000–2002)
Buffalo Museum of Science Microbiology Presentations in association with Mi; UB Liason and Presenter; Presentor (2000)
RNA Graduate Group; Co-Founder (2000)
Inquiry Program West Seneca Schools, Microbiology Program, 6th grade; organizer; Other (1999)
Director of Graduate Studies; Director (1998–2000)