Recent Faculty Publications

We share our research studies with physicians and scientists worldwide through publications in leading academic journals. View a listing of our faculty’s most recent publications.

Tseng ZJ, Pacheco-Castro A, Carranza-Castaneda O, Aranda-Gomez JJ, Wang X, and Troncoso H. Discovery of the fossil otter Enhydritherium terraenovae (Carnivora, Mammalia) in Mexico reconciles a palaeozoogeographic mystery. Biology Letters. 2017; 13
Cruz-Roa, A, Gilmore, H, Basavanhally, A, Feldman, M, Ganesan, S, Shih, NNC, Tomaszewski JE, Gonzalez, FA, Madabhushi, A. Accurate and reproducible invasive breast cancer detection in whole-slide images: A Deep Learning approach for quantifying tumor extent Sci Rep. 2017; 10(1038)
Cruz-Roa, A, Gilmore, H, Basavanhally, A, Feldman, M, Ganesan, S, Shih, NNC, Tomaszewski JE, Gonzalaez, FFA, Medabhushi, A. Accurate and reproducible invasive breast cancer detection in whole-slide images: A Deep Learning approach for quantifying tumor extent Sci Rep. 2017
Ginley, B, Tomaszewski JE, Yacoub R, Chen F, Sarder P. Unsupervised labeling of glomerular boundaries using Gabor filters and statisical testing in renal histology epub. 2017
DeSantis, L.R.G., Tseng, Z.J., Liu, J., Hurst, A., Schubert, B.W. and Jiangzuo, Q.. Assessing niche conservatism using a multiproxy approach: dietary ecology of extinct and extant spotted hyenas. Paleobiology. 2017
Mojica WD, Mojica GW. An iOS app to expedite the evaluation of immunohistochemistry control tissue.. Applied Immunohistochemistry and Molecular Morphology. 2017
Mojica WD, Hou T, Sykes D, Dey-Rao R. Front end genomics: Using an alternative approach for the recovery of high quality DNA from core needle biopsies.. J Clin Pathol. 2017; 70
Tu C, Mojica WD, Straubinger R, Li J, Shen S, Qu M, Nie L, Roberts R, An B, Qu J. Quantitative proteomic profiling of paired cancerous and normal colon epithelial cells isolated freshly from colorectal cancer patients. Proteomics Clin Appl. 2017
Chen G, Cen L, and Liu J. Cyprinus-like pharyngeal bones and teeth (Teleostei, Cypriniformes, Cyprinidae) from the Early–Middle Oligocene deposits of South China. Vertebrata PalAsiatica. 2017; 55(3)
Lutnick, B, Tomaszewski JE, Sarder P. Leveraging Unsupervised Training Sets for Multi-Scale Compartmentization in Renal Pathology. Proc SPIE Medical Imaging. 2017
Ginley, B, Tomaszewski JE, Sarder P. Automatic computational labeling of glomerular textural boundaries.. Digital Pathology. 2017
Gurcan, MN, Tomaszewski JE, Overton, JA, Doyle ST, Ruttenberg, A, Smith B. Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem. Epub. 2016; 12(006)
Gurcan, MN, Tomaszewski JE, Overton, JA, Doyle ST, Ruttenberg, A, Smith, B. Developing the Quantitative Histopathology Image Onetology(QHIO): A Case study using the hot spot detection problem J. Biomed Inform. 2016; 66
Bae YH¶, Liu SL, Byfield FJ, Janmey PA, Assoian RK. (¶ corresponding author). Measuring the Stiffness of Ex Vivo Mouse Aortas Using Atomic Force Microscopy.. Journal of Visualized Experiments. 2016; 116
Mojica WD, Oh KW, Lee H, Furlani EP, Sykes D, Sands AM. Microfluidics enables multiplex evaluation of the same cells for further studies. Cytopathology. 2016; 27(4)
Sarder P, Ginley B, Tomaszewski J. Automated renal histopathology: Digital extraction and quantification of renal pathology. Proc SPIE. 2016; 9791
Spengler RN, Ignatowski TA. Disruption of brain-TNF homeostasis elicits maladaptive alterations producing chronic pain. BrainImmune.com. 2016
Sarder P, Grinley, B, Tomaszewski JE. Automated renal histopathology: Digital extraction and quantification of renal pathology.. SPIE. 2016
Tseng ZJ, Geisler JH.. The first fossil record of borophagine dogs (Mammalia, Carnivora) from South Carolina, U.S.A.. Journal of Vertebrate Paleontology. 2016; 36(3)
Tseng ZJ, Wang X, Li Q, Xie G. Pliocene bone-cracking Hyaeninae (Carnivora, Mammalia) from the Zanda Basin, Tibet Autonomous Region, China.. Historical Biology. 2016; 28(1-2)

Research Funding

Networked Nanophotonic Devices for Stem Cell Regulation: From Optogenetics to Optogenomics. Yongho Bae (Co-Principal Investigator). National Science Foundation. 8/1/2017-7/1/2020.
Integration of Physical and Virtual Cadavers in a Hybrid Gross Anatomy Curriculum. Scott Doyle (Co-Investigator), Stuart Inglis (Co-Investigator). Center for Educational Innovation. $10,000. 5/1/2017-5/1/2018.
Computerized histologic image predictor of cancer outcome. John Tomaszewski (Co-Investigator). NIH/Case. $232,187. 7/1/2016-6/1/2021.

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