We hope this roadmap is useful in guiding your journey through the PPBS here at UB. Note this is a working document. If you see something you think should be added, please reach out to Tony Waleszczak to make updates. We are always looking for more tips from those who have been there and successfully navigated a step along this journey.
Welcome to the PhD Program in Biomedical Sciences at the Jacobs School of Medicine and Biomedical Sciences!
We are excited to have you join our multidisciplinary training program in the biomedical sciences. This comprehensive program allows you to complete rotations in laboratories that represent over fifteen general research areas and, ultimately, earn a degree from one of eleven different programs. We will also teach you critical thinking and experimental design, which you will be able to apply to the discipline of your choice. Once you join a lab, there still remain numerous opportunities for interdisciplinary collaborations, driven by the collegial and supportive environment of the Jacobs School.
Congratulations on your acceptance, I look forward to working with you!
-Dr. Christine Schaner Tooley
| August | September | October | November | December |
|---|---|---|---|---|
| Fall 1 Rotation | Fall 2 Rotation | |||
| Receive fall mentor options & begin conversations with faculty | Submit mentor choices for fall 1 | Submit mentor choices for fall 2 | Receive spring mentor options & begin conversations with faculty | Submit mentor choices for spring 1 |
| New student orientation & start of fall classes | Spring course registration prep | End of fall classes & start of winter break | ||
| January | February | March | April | May |
|---|---|---|---|---|
| Spring 1 Rotation | Spring 2 Rotation | Spring 3 Rotation | ||
| Submit mentor choices for spring 2 | Submit mentor choices for spring 3 | |||
| Start of spring classes | End of spring classes | |||
| Finalize Match and PhD White Coat Ceremony | ||||
Note: Spring 1 rotation begins immediately after the New Year.
| July 1 |
|---|
| Official start date in doctoral lab |
All PPBS students are appointed as Research Assistants in their first year to compensate them for their work in UB laboratories.
You should expect about a one-month lag before you would get your first paycheck. Once paychecks kick in, they are issued on a biweekly basis.
Pre-Tax Earnings: $1192.30
Taxes withheld will vary based on the withholdings chosen on your HR paperwork.
We strongly encourage students to enroll in Direct Deposit so funds are electronically transferred to your bank account. Without this, you could run into a situation where a paper check is not accessible (e.g. during holidays or emergency closures). With direct deposit, your income will always be accessible. Documents needed: UB Card and voided check or bank official’s signature.
Once direct deposit is in effect, you will receive paper paystubs each pay period. We recommend that you go paperless since all the information is online.
The OBE office will enroll you in classes for your first semester and will process your tuition scholarship.
If you get a bill for tuition before your scholarship has been applied to your account, remember that you are not responsible for your tuition bill. Do not pay for tuition! Any late fees applied will be removed once your scholarship kicks in.
Tuition scholarships should show up on your student accounts in the first week of classes.
As part of UB’s PhD Excellence Initiative, the university will support the cost of student fees for PhD students who are full time and fully funded. Please contact us if you notice that fees are still showing up.
As an employee on an assistantship, you may opt to enroll in an employer-subsidized plan through UB. The cost is lower than the student medical insurance plan so it is the best option for many students. UB’s Human Resources office will email health insurance enrollment information after your appointment is processed. Once you are enrolled and have received your insurance card, you must use the card to request a waiver of the student medical insurance plan by early October. Please don’t ignore emails about this deadline or you could get stuck with a charge for student insurance.
You will receive half of your annual fellowship award in the fall semester and half in the spring semester. The funds will be applied to your student account on or around the first day of classes each term. You can enroll for direct deposit of your refund in the HUB Student Center.
This research ethics course covers topics relevant to both research ethics and life skills for graduate students, including time management and work/life balance, how to choose a dissertation mentor, primary data versus publishable data, authorship, team science and collaborations, women and diversity in science, career possibilities, funding of research and model systems. It is largely discussion based, and will occasionally use panels. Grades are based on class participation and written assignments.
This lecture-based course covers a broad range of topics, including molecules to enzymes, protein structure, molecular biology, genetics, cell biology, virology, receptors and signaling, organs and organ systems, immunology, vaccines, bacteriology, pharmacology, neuroscience, bacteriology and bacterial pathogenesis, biomedical informatics and bioinformatics. Given the breadth of topics, this course will focus on introductions to these topics rather than a comprehensive discussion. Grades are based on daily homework assignments and two term papers. The first paper is due mid-semester and the second is due at the end of the semester.
This literature-based course is a companion to BMS 515 and is comprised of 13 vignettes. Each vignette consists of an in depth introductory lecture that goes into the topic in sufficient detail so that students can understand a research paper that addresses that topic. The second part of each vignette consists of a student-led discussion of the research paper. All 13 of these vignettes are from topics that were first introduced in BMS 515. Grades are based on class participation, weekly quizzes, and weekly figure facts sheets. The figure facts sheet is a mechanism by which the students outline the salient information from the research paper to facilitate class discussion.
At the end of the fall semester you will be familiar with a broad range of topics making up biomedical research. The idea that a single scientific question can be approached form genetic, biochemical, structural, pharmacological, biophysical, anatomical, neurological and computational perspectives should be clear. You will also have had the opportunity to interact with a variety of PPBS faculty, which should help you with ranking your laboratory rotation choices.
You are expected to be on time for classes, and to actively participate. You are also expected to be engaged with classes or labwork from 9–5 Monday–Friday; you are not allowed to hold other jobs. If you are not in class, you should be in your assigned lab rotation. Depending on your laboratory rotation, you may also need to be available for evening or weekend hours. It is also important to realize that the academic calendar for the graduate school differs from the undergraduate calendar. You must consult with the Director before making any plans for traveling to ensure that you will not miss essential activities.
This is a journal club course offered in the second half of the spring semester, usually starting around spring break. For this course, PPBS students will be divided into 3-4 groups of 6-7 students each. Each group will be assigned to a different topic that will be administered by 1 or 2 faculty facilitators. Students will be surveyed in late fall for their ranked section choices. Once all of the students are assigned, the faculty facilitators will be in contact with the students to schedule to timing of the course. BMS 511 is a graded course, and will require the students to both prepare and present a journal club using a research paper that is approved by the course facilitator, as well as participate in the active discussion of the presented paper when the student is not the presenter. The purpose of this course is to 3-fold: 1) the introduce the students to an area of biomedical research that they may have little or no familiarity with; 2) to provide the students with mentored experience in preparing and presenting a journal club; and 3) to provide the students with mentored experience in critical evaluation of biomedical research.
You will be provided a list of courses from which you may select your electives. You are encouraged to enroll in courses that fulfill the requirements and/or electives for the department(s) in which you are interested in potentially matriculating. If you are unsure which department you want to matriculate into, then you are encouraged to enroll in courses you find interesting. Regardless of which department you ultimately join for your dissertation, the courses you took in the spring semester will count at a minimum towards your required electives, provided the courses were included in the provided list of electives. After selecting the courses you wish to take in the spring, you must complete the course choice form, and schedule an appointment with the PPBS Director for approval of their selections. Once approved, it is your responsibility to enroll in these courses.
You will complete 2 laboratory rotations in the fall semester and 2 lab rotations in the spring semester. These rotations are graded satisfactory (S) or unsatisfactory (U). If you fail to receive an S grade, you will be required to perform a remediation, which will be assigned by the Director.
Approximately 2 weeks prior to each rotation, you must provide OBE with the names of 4 faculty members with which you are interested in performing a lab rotation using the rotation choice form. These names must be ranked in order of priority. It is essential that you have spoken to all 4 faculty and obtained their permission to rotate for that rotation. Failure to submit the rotation choice form on time may jeopardize your ability to perform that rotation. The director will do their best to grant each student their first choice. Notification of rotation assignments will be made by email prior to the start of the rotation. To assist with rotation choices, you will be provided with a list of faculty that are either able to take a student into their lab for their dissertation research at the end of the academic year, or are unsure whether they will have space and money. Rotation choices are to be limited to only this list. If you are interested in other faculty, you should discuss those faculty with the Director to obtain permission before including them on your rotation choice form. This is for your own protection. You have a limited number of rotations and should spend them in labs that are inclined to accept a student.
During the 1st week of the rotation, you and the faculty mentor must fill out the pre-rotation form and return it to OBE. At the end of the rotation, both you and the faculty mentor will complete a rotation evaluation form. The faculty evaluation must be discussed face to face with you. Both the student and faculty evaluations must be returned to OBE.
While you must complete at least 4 rotations, you are allowed to return to a lab you previously rotated with for the 4th rotation if there is a mutual agreement between you and the faculty member that you may pursue your dissertation in that lab. In this case, include only that faculty member’s name on your rotation choice form. If you have not identified a lab with which you can match by the end of the 4th rotation, you will continue doing 4 week summer rotations until such time as you match.
The match process will start in February/March and will be completed by July 1, at which point you formally become a trainee of that faculty member. If the faculty member is affiliated with more than one department or program, you must decide, in consultation with the faculty member, into which department or program you will matriculate for your dissertation. You will periodically need to respond to emails and sign forms during the match, but most of the process will be administrative in nature and will not involve the your direct participation.
We want to stress that the most important part of picking a research mentor is finding someone that you interact with well. Your mentor should be someone you can talk to, and that motivates you to be your best. While you must be interested in the research project, projects come and go. The mentor will be there throughout your graduate training and will play an important role in your scientific development. They are also likely to play an important role in your next step, be it a professional or postdoctoral position. You therefore must feel comfortable talking to this individual.
We've compiled a workbook that will guide you through How to Choose a Mentor in 7 simple steps. You'll learn what makes a good mentor, how to prioritize your wishlist, how to craft an introductory email, and so much more. Download your workbook, and get started today!
After PPBS students have matched to their program, we will hold a PhD White Coat Ceremony in May. This event is a culmination of all your hard work in the first year and celebrates your matching to PhD laboratories. Each PPBS student will receive a customized white lab coat and will be formally cloaked by their PhD mentor.
The purpose of the Biomedical Graduate Student Government (BGSG) is to create strategies/proposals that will be communicated to administration in the greater JSMBS community to make positive changes and improve the graduate student experience.
Many of our programs and departments have Graduate Student Association (GSA) representatives.
Courses you took in the PPBS will meet degree requirements as either required courses or electives. Remaining course requirements will vary by department and should be discussed with your mentor and graduate director.
It may be possible for you to earn transfer credit for graduate courses you have already completed before PPBS, but this determination can’t be made until you match to a specific PhD program at the end of your first year. Please discuss this with your mentor or graduate director at that time.
In 1997 the University at Buffalo School of Medicine and Biomedical Sciences (SMBS) initiated an Interdisciplinary first-year Program for students seeking PhDs in areas of biomedical science (previously referred to as the IGPBS). The organizational guidelines for this interdisciplinary first-year entry-portal PhD Program in the Biomedical Sciences (hereafter PPBS) are formalized in this document. The PPBS is responsible for: recruiting and admission of PhD-seeking students to the PPBS, establishing and administering their first-year curriculum, and mentoring of first-year PPBS students. Each student admitted into the PPBS is allowed only a single year within the PPBS after which they must matriculate into a PhD degree-granting program, which then becomes responsible for their subsequent education and mentoring. Internal PPBS organizational guidelines were initially developed by previous Directors and Steering Committees of the PPBS. From these earlier documents was developed this set of PPBS Organizational Guidelines for ratification by the Jacobs School Faculty Council and the Dean of the Jacobs School.
The PPBS will be administered by a PPBS Program Director (PD) and a PPBS Recruiting and Admissions Director (DRA), both of whom will be appointed by the Dean and under the supervision of the Senior Associate Dean for Biomedical Education. Members of the Steering Committee (SC) and the Admissions Committee (AC) will be asked for and will provide recommendations and advice to these three individuals, as appropriate.
The PD is responsible for immediate supervision of all faculty committees and students within the PPBS. The PD will oversee all aspects of the PPBS including: student registration, advisement, and evaluation. The PD chairs the PPBS Steering Committee and acts as liaison between this committee and the PPBS students. The PD reports to the Senior Associate Dean for Biomedical Education.
The PPBS Steering Committee (SC) functions to provide lines of communication between the Departments and the Program/PD. The committee coordinates functions of all ad hoc committees and formulates and approves program policies and procedures. In addition, the committee evaluates the academic progress of PPBS students via one-on-one mentoring and evaluation of class and rotation performance. The mentoring role of SC members is considered a strength and vital aspect of the PPBS.
The SC is composed of one member from each participating Department or Program. The significant role of this committee requires that all SC members be fully invested in the training and mentorship of PhD students. Optimally this means that SC members either currently are training or have recently trained a PhD student. As with other standing committees of the Jacobs School, appointments to the SC are made by the Dean. Each Department, preferably in consultation with the PD, may vote to nominate a faculty member to the Dean, or the Dean may make the appointment at his/her discretion. Appointments to the SC shall be for a three-year term, which can be renewable, with no more than half of the SC turning over during any one year.
The SC is chaired by the PD and meets at least quarterly. SC members who have two consecutive unexcused absences from committee meetings and/or are remiss in their mentoring functions, may be dismissed from the SC by the Senior Associate Dean for Biomedical Education at the recommendation of the PD. Another member of that Department or Program will be appointed to the SC by the Dean as described above.
The Director of Recruiting and Admissions (DRA) is responsible for directing and coordinating all aspects of the recruiting and admissions process and will chair the Admissions Committee (AC). The AC will be composed of two members (one primary and one secondary) from each participating department/program. All members of the AC will be appointed by the Senior Associate Dean for Biomedical Education on behalf of the Dean. Prospective members will be nominated by their departmental or program faculty or Chair, preferably in consultation with the DRA, and appointed to the AC by the Senior Associate Dean for Biomedical Education. AC members must be invested in the recruitment, retention, and training of PhD students. Optimally, AC members will have an active research program and either currently be training or have recently trained a PhD student. Terms of service of primary members will be 2 years, after which the secondary member will take on the primary assignment and a new secondary member will be appointed. Terms of the departmental or program members will be assigned to ensure that membership will be overlapping to assist in maintaining committee integrity and functional ‘memory’.
Upon recommendation of the DRA, AC Members who have two consecutive unexcused absences and/or fail to carry out the responsibilities required by this Committee may be dismissed from the AC by the Senior Associate Dean for Biomedical Education. Appointment of a replacement Departmental representative to the AC by the Senior Associate Dean for Biomedical Education will be carried out as described above.
The DRA, upon advisement by the AC, works with the Office of Biomedical Education Director of Graduate Enrollment on developing and implementing recruitment strategies. The AC will review applications, interview prospective students, and determine which applicants are offered acceptances. The AC will have full authority to offer acceptances into the program and can be overridden by either the Senior Associate Dean for Biomedical Education or the PD ONLY under the most unusual circumstances, and then only after consultation with the DRA and the AC. To increase the chances of obtaining outstanding students into the program, members of the AC are expected to play an active role throughout recruitment, including after offers have been made, at the direction of the DRA. As diversity contributes to the strength of the program, the AC will also ensure implementation of University and SMBS affirmative action policies. The Senior Associate Dean for Biomedical Education will coordinate staff support of DRA and AC functions.
All incoming students are expected to have successfully completed courses in general and organic chemistry, physics, biology, and mathematics through calculus. Physical chemistry, cell biology, immunology, physiology, and genetics are desirable, although not required. All applicants must submit: (1) a complete and official transcript, (2) a personal statement describing their reasons for applying, any prior research experience, and career goals, and (3) a minimum of 3 confidential letters of recommendation written by individuals with a professional science background who have significant knowledge of the applicant. International applicants must also submit proof of English proficiency, unless eligible for a waiver under the Graduate School policy
Applicants are holistically reviewed and ranked based on the following criteria: GPA, personal statement, research experience, presentations and publications, letters of recommendation. GRE or other standardized test scores are not required; if submitted, they are not reviewed by the committee.
Criteria that will be considered by the committee are overall, ability to perform adequately in academic coursework, prior research experience, and reference letters. Only fully completed applications will be reviewed by the AC. Following review of these criteria by the AC, students will be invited for a personal interview, whenever feasible. Offers of admission, agreed upon by the AC, will be issued by the DRA.
PPBS faculty are appointed to the Graduate Faculty, with primary appointments in one of the participating Departments or Programs. Faculty included on the lists of PPBS faculty are expected to be actively involved in training graduate students. Faculty who mentor rotation students must complete Pre-Rotation Agreement and Post-Rotation Evaluation as described below.
Prior to each semester, Faculty will be polled about their interest in mentoring a PPBS rotation student. Faculty will be asked about willingness to host a student and plans to accept and support a student in July of the following summer. Uncertainty about sufficient available funds will not preclude accepting rotation students however the list of interested faculty that is provided to students will distinguish faculty who are unsure about availability in the lab in the coming year. Before a student will be allowed to join a lab, the Departmental Chair will sign a “back-stopping” letter, indicating that the chair will commit to support a student through graduation. In the spring semester, the Office of Biomedical Education will contact faculty and department Chair to ensure that the Chair intends to sign this letter.
The Office of Biomedical Education is committed to continued professional development of both our students and faculty mentors. Mentors will be expected to abide by policies and procedures instituted by the Jacobs School and the University at Buffalo Graduate School to ensure fair and professional treatment of students at all stages of their career.
Curricular matters fall under the provenance of the SC, which is responsible for ensuring that coursework reflect the current emphases of our disciplines. As needed, and at least every five years, the SC will appoint an ad hoc committee to assess the PPBS curriculum and recommend necessary changes.
Students are required to maintain a GPA of 3.0, and to obtain a grade of at least “B” in all required courses. In addition, students must receive a Satisfactory (S) grade in all laboratory rotations. Failure to meet these requirements will result in the student being placed on academic probation and are grounds for dismissal from the program. Students will be considered for immediate dismissal upon receiving a grade of “F” in any course, or two grades from among “C”, “D”, or “U”, or a grade point average of 2.5 or below in any semester. Students shall be dismissed upon being found guilty of academic dishonesty according to existing regulations (see the University at Buffalo’s Academic Integrity Policy). Students are required to maintain the highest ethics in their study, laboratory work, and examinations. Failure to do so will result in immediate dismissal from the PPBS.
All PPBS students are to register for required coursework. Courses for the Spring semester must meet program guidelines, and students must have their courses approved by the PD prior to Spring registration. Any changes to the approved coursework are subject to PD approval.
For BMS 515 and BMS 516, use of AI in presentation preparation is permitted in a non-substantive way that does not alter intellectual contribution. This includes grammar correction, stylistic edits, and formatting. You must clearly identify the use of AI-based tools in your work and failure to do so will be considered a violation of the University Academic Integrity policy.
Use of AI is prohibited for all other aspects of course assignments (homework, examinations, and oral presentations), including the following:
Use of AI in any of these manners will also be considered a violation of the University Academic Integrity policy and subject to university sanctions.
Though up to the discretion of the mentor, it is also strongly advised to avoid the use of AI for generation of rotation presentations or other rotation-related assignments.
To assist students in choosing a thesis mentor, students participate in a series of laboratory rotations. Students are required to complete three (3) laboratory rotations (BMS 509A and BMS 510A) during the academic year. Students also must participate in a fourth laboratory rotation during the spring semester. For this fourth laboratory rotation, students have the option of rotating in a new laboratory, continuing with their third laboratory rotation, or returning to finish a project in a prior laboratory rotation. These options require permission of the rotation faculty involved. Laboratory rotations are a “hands on” experience to assist students in choosing a dissertation mentor, and conversely, for the faculty to decide whether they would be willing to act as the student’s major advisor. All laboratory rotation assignments are made by the PD.
During the summer prior to enrollment, students will receive a list of faculty who are accepting new students into their laboratory; throughout the year students will be apprised of any changes to this list. In order to make an informed decision about choosing laboratory rotations and a thesis mentor, students are strongly encouraged to meet individually with faculty and other members of their laboratory to explore the faculty member’s research and other issues about working in that particular laboratory. Because laboratory rotations are intended to broaden a student’s research experience, students are encouraged to perform their rotations with faculty in different disciplines.
Early in the fall semester, students will submit a prioritized list of three or four faculty members in whose laboratories they would like to perform the first Fall laboratory rotation (BMS 509). Students are strongly urged to make full use of web and other local resources to familiarize themselves, in general terms, with faculty research programs prior to submitting this list. The PD will review the lists and will make decisions to match students and faculty to best accommodate all students and mentors fairly. Later in the Fall semester a similar matching procedure will be carried out to establish the students’ Fall II laboratory rotations (BMS510). Similarly, the process will continue with choices made in December for the students’ Spring I rotations (BMS 509, 510). All students shall do a fourth rotation, which may involve returning to one of their earlier rotation labs. Once rotation assignments have been made, students may request a change in their assignments at any time prior to the actual start date of the laboratory rotation. This change requires permission of the PD. Students or faculty may not request changes after the start date for each laboratory rotation.
At the beginning of the laboratory rotation, faculty will discuss the objective of the studies to be undertaken, what techniques will be used, as well as their requirements and expectations. A Pre-Laboratory Rotation Agreement form will be signed and submitted to the PD. Students are expected to work approximately 15 - 20 hrs/week in the laboratory during their rotations. Any reasons for an absence from the rotation for a period longer than two consecutive days of the week should be discussed with the rotation mentor. If a student is routinely absent from a rotation, the mentor will inform the PD of the situation who will discuss the issue with the rotation student. At the end of the laboratory rotation faculty will submit their review the student’s performance including a discussion of student’s strengths and weakness, and areas in need of improvement. At this ‘exit interview’, faculty may indicate their willingness to act as the student’s thesis advisor. However, to enable students in later rotations to have equal access and opportunity, neither the faculty nor the students may make any commitments regarding the student being offered a position in a laboratory. Faculty will have full access to the files of students who rotate in their laboratory.
During rotations, students and mentors should not commit to joining a lab. At a stated time point (currently half-way through the Spring I rotation), students will be permitted to approach faculty to ask about making an “unofficial match”, which will lead to joining that lab and matriculating in that department. The PD will review the request and ensure that the requested mentor is willing and financially able to accept that student into their laboratory. Final acceptance into a specific laboratory and doctoral program is contingent upon completion of requirements set forth by the Office of Biomedical Education and acceptance by the departmental or program Admissions Committee and completion of the Letter of Intent for Dissertation Residency. Students selecting a mentor having joint appointments in multiple departments/programs must indicate the course of study that they will follow.
Students who are not successful in finding a thesis mentor during the Spring II or III rotations will have the opportunity to participate in one or more extra laboratory rotations in the summer. The intent of this additional laboratory rotation is to find a thesis mentor. All students must be matched with a thesis mentor by early August of the end of their first year. Failure to match with a mentor will lead to dismissal from the JSMBS PhD program.
The PPBS SC reviews student performance including all grades and laboratory rotation evaluations at the end of each semester. Students who have not met the minimum GPA (3.0) requirement or who have received a “Unsatisfactory” grade in a rotation will be placed on probation. Poor academic performance will lead to dismissal from the program. Students will be considered for immediate dismissal upon receiving a grade of “F” in any course, or two grades from among “C”, “D”, or “U”, or a grade point average of 2.5 or below in any semester. Students shall be dismissed upon being found guilty of academic dishonesty according to existing regulations (see the University at Buffalo’s Academic Integrity Policy). Students are required to maintain the highest ethics in their study, laboratory work, and examinations. Failure to do so will result in immediate dismissal from the PPBS. Generally, final academic decisions are made after the spring semester allowing the students the opportunity to improve their performance. It is very important that students who have any concerns or questions discuss those issues with the PD.
During the first year of the program, students receive guidance and advice from the PD and from members of the SC. First year students who feel that they have a need for course mentoring should contact the appropriate course coordinator and the PD as soon as possible to make the necessary arrangements. Upon matriculation into specific doctoral programs, students will receive guidance from their dissertation mentor and the Director of Graduate Studies of their program.
Students must adhere to the calendar set forth by the PPBS and the Jacobs School Graduate Student handbook. No vacations may be taken during coursework or rotations. Students with compelling reasons for taking a longer vacation or leave or who are unable to meet the requirements of the calendar of the PPBS must receive explicit permission from the PD after consultation with the SC. This request, in writing, must be made in a timely fashion, i.e., prior to making airline or other arrangements, to allow review by the PD and SC. Failure to receive prior approval may result in loss of financial support and/or termination from the PPBS.

955 Main Street Office 4214 Lab 4220 Buffalo, NY 14203
Phone: 716-829-2978; Fax: 716-829-2725
Email: ceschane@buffalo.edu
Tony Waleszczak
Graduate Program Coordinator
Tanner A. Gelatt
Director of Strategic Graduate Enrollment and Operations
Office of Biomedical Education

