Recent Faculty Publications

Our contributions to the scholarly literature demonstrate our commitment to advancing the field of biomedical informatics.

Van Norden M, Mangione W, Falls Z, Samudrala R. (2024) Strategies for robust, accurate, and generalizable benchmarking of drug discovery platforms. bioRxiv : the preprint server for biology (Dec). doi:10.1101/2024.12.10.627863
Van Norden M, Mangione W, Falls Z, Samudrala R. (2024) Strategies for robust, accurate, and generalizable benchmarking of drug discovery platforms. bioRxiv : the preprint server for biology (Dec). doi:10.1101/2024.12.10.627863
Toro S, Anagnostopoulos AV, Bello SM, Blumberg K, Cameron R, Carmody L, Diehl AD, Dooley DM, Duncan WD, Fey P, Gaudet P, Harris NL, Joachimiak MP, Kiani L, Lubiana T, Munoz-Torres MC, O'Neil S, Osumi-Sutherland D, Puig-Barbe A, Reese JT, Reiser L, Robb SM, Ruemping T, Seager J, Sid E, Stefancsik R, Weber M, Wood V, Haendel MA, Mungall CJ. (2024) Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). Journal of biomedical semantics (Oct), 15(1): 19. doi:10.1186/s13326-024-00320-3
Hall, K., Bocobo, G., Badwal, R., & Panesar, M. (2024) Hall, K., Bocobo, G., Badwal, R., & Panesar, M. (2024). Evolutionary role of physician leaders in healthcare informatics and health technology. Health informatics journal, 30(4), 14604582241292216. https://doi.org/10.1177/14604582241292216. Journal (Oct), 4(30) doi:doi.org/10.1177/14604582241292216
Kuo TY, Lu CH, Falls Z, Jette G, Gibson W, Elkin PL, Leonard KE, Bednarczyk EM, Jacobs DM. (2024) High-risk use of prescription opioids among patients treated for alcohol problems in New York State. A repeated cross-sectional study, 2005-2018. Drug and alcohol dependence reports (Sep), 12: 100278. doi:10.1016/j.dadr.2024.100278
Lu CH, Su HY, Falls Z, Jacobs DM, Zhang Q, Gibson W, Jette G, Paul D, Elkin PL, Leonard KE, Bednarczyk EM. (2024) Differences in prescribing patterns of opioid dependence drugs among patients with primary alcohol use problems and opioid use disorders within New York State by social determinant factors, 2005-2018. Journal of the American Pharmacists Association : JAPhA (Sep)102258.
Tomlin C, Piracha MU, Stephens R, Tiosano S, Rangan P, Falls Z, Leonard KE, Elkin PL. (2024) The Effect of Antidepressants on Withdrawal in Patients with Alcohol Dependence: A Retrospective Study. Studies in health technology and informatics (Aug), 316: 284-285.
Bartnik A, Serra LM, Smith M, Duncan WD, Wishnie L, Ruttenberg A, Dwyer MG, Diehl AD. (2024) MRIO: the Magnetic Resonance Imaging Acquisition and Analysis Ontology. Neuroinformatics (Jul), 22(3): 269-283. doi:https://doi.org/10.1007/s12021-024-09664-8
Van Norden M, Falls Z, Mandloi S, Segal BH, Baysal BE, Samudrala R, Elkin PL. (2024) The implications of APOBEC3-mediated C-to-U RNA editing for human disease. Communications biology (May), 7(1): 529. doi:10.1038/s42003-024-06239-w
Van Norden M, Falls Z, Mandloi S, Segal BH, Baysal BE, Samudrala R, Elkin PL. (2024) The implications of APOBEC3-mediated C-to-U RNA editing for human disease. Communications biology (May), 7(1): 529. doi:10.1038/s42003-024-06239-w
He YO, Barisoni L, Rosenberg AZ, Robinson PN, Diehl AD, Chen Y, Phuong JP, Hansen J, Herr BW, Börner K, Bonevich N, Arnous G, Boddapati S, Zheng J, Alakwaa F, Sardar P, Duncan WD, Liang C, Valerius MT, Jain S, Iyengar R, Himmelfarb J, Kretzler M,. (2024) Ontology-based modeling, integration, and analysis of heterogeneous clinical, pathological, and molecular kidney data for precision medicine. bioRxiv : the preprint server for biology (Apr) doi:10.1101/2024.04.01.587658
Hall KC, Lauria M. (2024) Processes and the Electronic Health Record: Challenges and Difficulties Faced when Creating an OB Quality Dashboard. Studies in health technology and informatics (Jan), 310: 1408-1409.
Pengput A, Ceusters W. (2024) Setting the Scene to Link SNOMED CT to Realism-Based Ontologies. Studies in health technology and informatics (Jan), 310: 84-88.
Antle JP, LaRock MA, Falls Z, Ng C, Atilla-Gokcumen GE, Aga DS, Simpson SM. (2024) Building Chemical Intuition about Physicochemical Properties of C8-Per-/Polyfluoroalkyl Carboxylic Acids through Computational Means. ACS ES&T engineering (Jan), 4(1): 196-208. doi:10.1021/acsestengg.3c00267
Falls Z, Zhang X, Elkin PL, Jacobs D, Bednarczyk EM, Gibson W, Jette GP, Leonard KE. (2024) Incidence, Timing and Social Correlates of the Development of Opioid Use Disorder Among Clients Seeking Treatment for an Alcohol Use Problem: Changes Over the Three Waves of the Opioid Epidemic. Substance abuse and rehabilitation (Jan), 15: 185-195. doi:10.2147/SAR.S482717
Rabenberg M, Ceusters W. (2024) Fiat Surfaces in the Basic Formal Ontology. Formal ontology in information systems : proceedings of the ... International Conference. FOIS (Conference) (Jan), 394: 268-282. doi:10.3233/FAIA241313
Manish M, Mishra S, Pahuja M, Anand A, Subbarao N, Samudrala R. (2023) Computational Grafting of Epitopes. Methods in molecular biology (Clifton, N.J.) (Aug), 2673: 111-122.
Lu CH, Jette G, Falls Z, Jacobs DM, Gibson W, Bednarczyk EM, Kuo TY, Lape-Newman B, Leonard KE, Elkin PL. (2023) A cohort of patients in New York State with an alcohol use disorder and subsequent treatment information - A merging of two administrative data sources. Journal of biomedical informatics (Aug), 144: 104443.
Bartnik A, Serra LM, Smith M, Duncan WD, Wishnie L, Ruttenberg A, Dwyer MG, Diehl AD. (2023) MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology. bioRxiv : the preprint server for biology (Aug). doi:10.1101/2023.08.04.552020
Van Norden M, Falls Z, Mandloi S, Segal B, Baysal B, Samudrala R, Elkin PL. (2023) The Role of C-to-U RNA Editing in Human Biodiversity. bioRxiv : the preprint server for biology (Jul). doi:10.1101/2023.07.31.550344

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