Recent Faculty Publications

Our contributions to the scholarly literature demonstrate our commitment to advancing the field of biomedical informatics.

Hall KC, Lauria M. (2024) Processes and the Electronic Health Record: Challenges and Difficulties Faced when Creating an OB Quality Dashboard. Studies in health technology and informatics (Jan), 310: 1408-1409.
Manish M, Mishra S, Pahuja M, Anand A, Subbarao N, Samudrala R. (2023) Computational Grafting of Epitopes. Methods in molecular biology (Clifton, N.J.) (Aug), 2673: 111-122.
Lu CH, Jette G, Falls Z, Jacobs DM, Gibson W, Bednarczyk EM, Kuo TY, Lape-Newman B, Leonard KE, Elkin PL. (2023) A cohort of patients in New York State with an alcohol use disorder and subsequent treatment information - A merging of two administrative data sources. Journal of biomedical informatics (Aug), 144: 104443.
Van Norden M, Falls Z, Mandloi S, Segal B, Baysal B, Samudrala R, Elkin PL. (2023) The Role of C-to-U RNA Editing in Human Biodiversity. bioRxiv : the preprint server for biology (Jul). doi:10.1101/2023.07.31.550344
Handelmann CR, Tsompana M, Samudrala R, Buck MJ. (2023) The impact of nucleosome structure on CRISPR/Cas9 fidelity. Nucleic acids research (Mar), 51(5): 2333-2344. doi:10.1093/nar/gkad021
Kumari R, Sharma SD, Kumar A, Ende Z, Mishina M, Wang Y, Falls Z, Samudrala R, Pohl J, Knight PR, Sambhara S. (2023) Antiviral Approaches against Influenza Virus. Clinical microbiology reviews (Jan)e0004022.
Kumari R, Sharma SD, Kumar A, Ende Z, Mishina M, Wang Y, Falls Z, Samudrala R, Pohl J, Knight PR, Sambhara S. (2023) Antiviral Approaches against Influenza Virus. Clinical microbiology reviews (Jan)e0004022.
Bruggemann L, Falls Z, Mangione W, Schwartz SA, Battaglia S, Aalinkeel R, Mahajan SD, Samudrala R. (2023) Multiscale Analysis and Validation of Effective Drug Combinations Targeting Driver KRAS Mutations in Non-Small Cell Lung Cancer. International journal of molecular sciences (Jan), 24(2) doi:10.3390/ijms24020997
Bruggemann L, Falls Z, Mangione W, Schwartz SA, Battaglia S, Aalinkeel R, Mahajan SD, Samudrala R. (2023) Multiscale Analysis and Validation of Effective Drug Combinations Targeting Driver KRAS Mutations in Non-Small Cell Lung Cancer. International journal of molecular sciences (Jan), 24(2). doi:10.3390/ijms24020997
Elkin PL, Brown SH, Resendez S, McCray W, Resnick M, Hall K, Franklin G, Connors JM, Cushman M. (2023) COVID-19 vaccination and venous thromboembolism risk in older veterans. Journal of clinical and translational science (Jan), 7(1): e55. doi:10.1017/cts.2022.527
Elkin PL, Brown SH, Resendez S, McCray W, Resnick M, Hall K, Franklin G, Connors JM, Cushman M. (2023) COVID-19 vaccination and venous thromboembolism risk in older veterans. Journal of clinical and translational science (Jan), 7(1): e55. doi:10.1017/cts.2022.527
Mangione W, Falls Z, Samudrala R. (2023) Effective holistic characterization of small molecule effects using heterogeneous biological networks. Frontiers in pharmacology (Jan), 14: 1113007. doi:10.3389/fphar.2023.1113007
Mangione W, Falls Z, Samudrala R. (2023) Effective holistic characterization of small molecule effects using heterogeneous biological networks. Frontiers in pharmacology (Jan), 14: 1113007. doi:10.3389/fphar.2023.1113007
Jacobs DM, Tober R, Yu C, Gibson W, Dunn T, Lu CH, Bednzarczyk E, Jette G, Lape-Newman B, Falls Z, Elkin PL, Leonard KE. (2022) Trends in Prescribing Opioids, Benzodiazepines, and Both Among Adults with Alcohol Use Disorder in New York State. Journal of general internal medicine (Jun)
Moukheiber L, Mangione W, Moukheiber M, Maleki S, Falls Z, Gao M, Samudrala R. (2022) Identifying Protein Features and Pathways Responsible for Toxicity Using Machine Learning and Tox21: Implications for Predictive Toxicology. Molecules (Basel, Switzerland) (May), 27(9) doi:10.3390/molecules27093021
Moukheiber L, Mangione W, Moukheiber M, Maleki S, Falls Z, Gao M, Samudrala R. (2022) Identifying Protein Features and Pathways Responsible for Toxicity Using Machine Learning and Tox21: Implications for Predictive Toxicology. Molecules (Basel, Switzerland) (May), 27(9) doi:10.3390/molecules27093021
Falls Z, Brown SH, Shah N, LeHouillier F, Badwal R, Hall K, Franklin G, Kelly WH, Holdaway A, Montella D, Wedemeyer L, Keni S, Rose E, Nebeker JR, Elkin PL. (2022) CDS-Compare: A Web Application for Machine Learning Assisted Curation of Clinical Order Sets. (May) 465-469
Falls Z, Brown SH, Shah N, LeHouillier F, Badwal R, Hall K, Franklin G, Kelly WH, Holdaway A, Montella D, Wedemeyer L, Keni S, Rose E, Nebeker JR, Elkin PL. (2022) CDS-Compare: A Web Application for Machine Learning Assisted Curation of Clinical Order Sets. Studies in health technology and informatics (May), 294: 465-469.
Falls Z, Brown SH, Shah N, LeHouillier F, Badwal R, Hall K, Franklin G, Kelly WH, Holdaway A, Montella D, Wedemeyer L, Keni S, Rose E, Nebeker JR, Elkin PL. (2022) CDS-Compare: A Web Application for Machine Learning Assisted Curation of Clinical Order Sets. Studies in health technology and informatics (May), 294: 465-469.
Mammen MJ, Tu C, Morris MC, Richman S, Mangione W, Falls Z, Qu J, Broderick G, Sethi S, Samudrala R. (2022) Proteomic Network Analysis of Bronchoalveolar Lavage Fluid in Ex-Smokers to Discover Implicated Protein Targets and Novel Drug Treatments for Chronic Obstructive Pulmonary Disease. Pharmaceuticals (Basel, Switzerland) (May), 15(5) doi:10.3390/ph15050566

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