Recent Faculty Publications

Our contributions to the scholarly literature demonstrate our commitment to advancing the field of biomedical informatics.

Van Norden M, Mangione W, Falls Z, Samudrala R. (2024) Strategies for robust, accurate, and generalizable benchmarking of drug discovery platforms. bioRxiv : the preprint server for biology (Dec). doi:10.1101/2024.12.10.627863
Van Norden M, Mangione W, Falls Z, Samudrala R. (2024) Strategies for robust, accurate, and generalizable benchmarking of drug discovery platforms. bioRxiv : the preprint server for biology (Dec). doi:10.1101/2024.12.10.627863
Kuo TY, Lu CH, Falls Z, Jette G, Gibson W, Elkin PL, Leonard KE, Bednarczyk EM, Jacobs DM. (2024) High-risk use of prescription opioids among patients treated for alcohol problems in New York State. A repeated cross-sectional study, 2005-2018. Drug and alcohol dependence reports (Sep), 12: 100278. doi:10.1016/j.dadr.2024.100278
Lu CH, Su HY, Falls Z, Jacobs DM, Zhang Q, Gibson W, Jette G, Paul D, Elkin PL, Leonard KE, Bednarczyk EM. (2024) Differences in prescribing patterns of opioid dependence drugs among patients with primary alcohol use problems and opioid use disorders within New York State by social determinant factors, 2005-2018. Journal of the American Pharmacists Association : JAPhA (Sep)102258.
Tomlin C, Piracha MU, Stephens R, Tiosano S, Rangan P, Falls Z, Leonard KE, Elkin PL. (2024) The Effect of Antidepressants on Withdrawal in Patients with Alcohol Dependence: A Retrospective Study. Studies in health technology and informatics (Aug), 316: 284-285.
Van Norden M, Falls Z, Mandloi S, Segal BH, Baysal BE, Samudrala R, Elkin PL. (2024) The implications of APOBEC3-mediated C-to-U RNA editing for human disease. Communications biology (May), 7(1): 529. doi:10.1038/s42003-024-06239-w
Van Norden M, Falls Z, Mandloi S, Segal BH, Baysal BE, Samudrala R, Elkin PL. (2024) The implications of APOBEC3-mediated C-to-U RNA editing for human disease. Communications biology (May), 7(1): 529. doi:10.1038/s42003-024-06239-w
Hall KC, Lauria M. (2024) Processes and the Electronic Health Record: Challenges and Difficulties Faced when Creating an OB Quality Dashboard. Studies in health technology and informatics (Jan), 310: 1408-1409.
Pengput A, Ceusters W. (2024) Setting the Scene to Link SNOMED CT to Realism-Based Ontologies. Studies in health technology and informatics (Jan), 310: 84-88.
Antle JP, LaRock MA, Falls Z, Ng C, Atilla-Gokcumen GE, Aga DS, Simpson SM. (2024) Building Chemical Intuition about Physicochemical Properties of C8-Per-/Polyfluoroalkyl Carboxylic Acids through Computational Means. ACS ES&T engineering (Jan), 4(1): 196-208. doi:10.1021/acsestengg.3c00267
Falls Z, Zhang X, Elkin PL, Jacobs D, Bednarczyk EM, Gibson W, Jette GP, Leonard KE. (2024) Incidence, Timing and Social Correlates of the Development of Opioid Use Disorder Among Clients Seeking Treatment for an Alcohol Use Problem: Changes Over the Three Waves of the Opioid Epidemic. Substance abuse and rehabilitation (Jan), 15: 185-195. doi:10.2147/SAR.S482717
Rabenberg M, Ceusters W. (2024) Fiat Surfaces in the Basic Formal Ontology. Formal ontology in information systems : proceedings of the ... International Conference. FOIS (Conference) (Jan), 394: 268-282. doi:10.3233/FAIA241313
Manish M, Mishra S, Pahuja M, Anand A, Subbarao N, Samudrala R. (2023) Computational Grafting of Epitopes. Methods in molecular biology (Clifton, N.J.) (Aug), 2673: 111-122.
Lu CH, Jette G, Falls Z, Jacobs DM, Gibson W, Bednarczyk EM, Kuo TY, Lape-Newman B, Leonard KE, Elkin PL. (2023) A cohort of patients in New York State with an alcohol use disorder and subsequent treatment information - A merging of two administrative data sources. Journal of biomedical informatics (Aug), 144: 104443.
Van Norden M, Falls Z, Mandloi S, Segal B, Baysal B, Samudrala R, Elkin PL. (2023) The Role of C-to-U RNA Editing in Human Biodiversity. bioRxiv : the preprint server for biology (Jul). doi:10.1101/2023.07.31.550344
Van Norden M, Falls Z, Mandloi S, Segal B, Baysal B, Samudrala R, Elkin PL. (2023) The Role of C-to-U RNA Editing in Human Biodiversity. bioRxiv : the preprint server for biology (Jul). doi:10.1101/2023.07.31.550344
Handelmann CR, Tsompana M, Samudrala R, Buck MJ. (2023) The impact of nucleosome structure on CRISPR/Cas9 fidelity. Nucleic acids research (Mar), 51(5): 2333-2344. doi:10.1093/nar/gkad021
Kumari R, Sharma SD, Kumar A, Ende Z, Mishina M, Wang Y, Falls Z, Samudrala R, Pohl J, Knight PR, Sambhara S. (2023) Antiviral Approaches against Influenza Virus. Clinical microbiology reviews (Jan)e0004022.
Kumari R, Sharma SD, Kumar A, Ende Z, Mishina M, Wang Y, Falls Z, Samudrala R, Pohl J, Knight PR, Sambhara S. (2023) Antiviral Approaches against Influenza Virus. Clinical microbiology reviews (Jan)e0004022.
Bruggemann L, Falls Z, Mangione W, Schwartz SA, Battaglia S, Aalinkeel R, Mahajan SD, Samudrala R. (2023) Multiscale Analysis and Validation of Effective Drug Combinations Targeting Driver KRAS Mutations in Non-Small Cell Lung Cancer. International journal of molecular sciences (Jan), 24(2) doi:10.3390/ijms24020997

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